Fire Browse Beta API Returns RNASeq expression quartiles, e.g. suitable for drawing a boxplot.

Fire Browse - Returns RNASeq expression quartiles, e.g. suitable for drawing a boxplot.

For a given gene compute quartiles and extrema, suitable e.g. for drawing a boxplot (Tukey 1977). Results may be filtered by cohort, sample type, patient barcode or characterization protocol, and are returned sorted by cohort. Note that samples for which no expression value was recorded (e.g. the melanoma sample TCGA-GN-262) are removed prior to calculation.

Posted on:

2018-08-27

API Description

Provider

Fire Browse

decription

A simple and elegant way to explore cancer data. Sitting above one of the deepest and most integratively characterized open cancer datasets in the world. Backed by a powerful computational infrastructure, application programming interface (API), graphical tools and online reports. With over 80K sample aliquots from 11,000+ cancer patients, spanning 38 unique disease cohorts.

Curl command through Streamdata.io

curl -v "https://streamdata.motwin.net/http://firebrowse.org/api/v1/Analyses/mRNASeq/Quartiles?X-Sd-Token={streamdata_token}&cohort={field_value}&Exclude={field_value}&format={field_value}&gene={field_value}&protocol={field_value}&sample_type={field_value}"



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